Apr 19-22, 2022
11:00 - 3:00 EDT
Instructors: Jake Szamosi, Shahrokh Shekarriz, Chris Geroux
Helpers: Sarah Asbury, Evan Mann, Grace Fishbein, Amos Raphenya
Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly apply skills learned to their own research. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.
For more information on what we teach and why, please see our paper "Good Enough Practices for Scientific Computing".
This is a pilot workshop, testing out a lesson that is still under development. The lesson authors would appreciate any feedback you can give them about the lesson content and suggestions for how it could be further improved.
Who: The course is aimed at graduate students and other researchers at Canadian universities who are hoping to learn the basics of genomic analysis. You don't need to have any previous knowledge of the tools that will be presented at the workshop.
When: Apr 19-22, 2022. Add to your Google Calendar.
Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below).
Accessibility: We are committed to making this workshop accessible to everybody. For workshops at a physical location, the workshop organizers have checked that:
Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.
Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
|Before starting||Pre-workshop survey|
|11:00 EDT||Project Organization and Management|
|12:45 EDT||Introduction to the Command Line|
|11:00 EDT||Continuation: Introduction to the Command Line|
|1:10 EDT||Data Wrangling and Processing|
|Afternoon||Introduction to Cloud Computing for Genomics|
The lesson taught in this workshop is being piloted and a precise schedule is yet to be established. The workshop will include regular breaks. Please contact the workshop organisers if you would like more information about the planned schedule.
To participate in a Data Carpentry workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.
You will need some software installed on your Computer in order to participate in this workshop.
Installing a Unix-like terminal: